PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g023100.1
Common NameMTR_2g023100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 78aa    MW: 8807.82 Da    PI: 5.0657
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g023100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-112868345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      +++eE+++ ++ +++ G++ W++Ia +++ gRt++++  +w 
  Medtr2g023100.1 28 EFSPEEEDIVAKMFRLVGKR-WHLIAGRIP-GRTPEDIEKYWT 68
                     79******************.*********.***********5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.5292175IPR017930Myb domain
SMARTSM007172.9E-82573IPR001005SANT/Myb domain
CDDcd001675.41E-92867No hitNo description
Gene3DG3DSA:1.10.10.603.3E-132869IPR009057Homeodomain-like
PfamPF002493.4E-102868IPR001005SANT/Myb domain
SuperFamilySSF466894.13E-92971IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MSDSKYATTA NNGQYVSSDQ MNREDVLEFS PEEEDIVAKM FRLVGKRWHL IAGRIPGRTP  60
EDIEKYWTSK FSSSTAC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462813.14e-53myb transcription factor
SwissprotO220598e-18CPC_ARATH; Transcription factor CPC
TrEMBLA0A072V6B34e-53A0A072V6B3_MEDTR; Myb transcription factor
STRINGVIT_10s0116g00500.t012e-23(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26923178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.15e-19MYB_related family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]